Detailed information of SNP:
|
SNP ID:
sf0905074837(Gbrowse)
Chromosome: chr09 Position: 5074837 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 95.97% | 4.03% |
| All Indica | 780 | 96.67% | 3.33% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 59 | 61.02% | 38.98% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905074837 | G->A | LOC_Os09g09430(LOC_Os09g09430.1) | INTRON |