Detailed information of SNP:
|
SNP ID:
sf0905075333(Gbrowse)
Chromosome: chr09 Position: 5075333 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 98.07% | 1.93% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 477 | 94.97% | 5.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 98.12% | 1.88% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905075333 | G->A | LOC_Os09g09430(LOC_Os09g09430.1) | Non-Synonymous SNP |