Detailed information of SNP:
|
SNP ID:
sf0905149436(Gbrowse)
Chromosome: chr09 Position: 5149436 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.33% | 37.67% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905149436 | T->C | LOC_Os09g09540(LOC_Os09g09540.1) | UTR_3_PRIME |