Detailed information of SNP:
|
SNP ID:
sf0905149688(Gbrowse)
Chromosome: chr09 Position: 5149688 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.46% | 43.54% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905149688 | T->C | LOC_Os09g09540(LOC_Os09g09540.1) | UTR_3_PRIME |