Detailed information of SNP:
|
SNP ID:
sf0905167183(Gbrowse)
Chromosome: chr09 Position: 5167183 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905167183 | G->A | LOC_Os09g09580(LOC_Os09g09580.1) | Synonymous |