Detailed information of SNP:
|
SNP ID:
sf0905239849(Gbrowse)
Chromosome: chr09 Position: 5239849 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.20% | 4.80% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905239849 | C->T | INTERGENIC | None |