Detailed information of SNP:
|
SNP ID:
sf0905247850(Gbrowse)
Chromosome: chr09 Position: 5247850 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 56.88% | 43.12% |
| All Indica | 772 | 33.16% | 66.84% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 357 | 46.22% | 53.78% |
| Indica II | 208 | 16.35% | 83.65% |
| Indica Intermediate | 207 | 27.54% | 72.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905247850 | A->C | LOC_Os09g09700(LOC_Os09g09700.1) | Non-Synonymous SNP |