Detailed information of SNP:
|
SNP ID:
sf0905248395(Gbrowse)
Chromosome: chr09 Position: 5248395 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 95.36% | 4.64% |
| All Indica | 782 | 92.58% | 7.42% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 92.68% | 7.32% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905248395 | A->C | LOC_Os09g09700(LOC_Os09g09700.1) | Synonymous |