Detailed information of SNP:
|
SNP ID:
sf0905250599(Gbrowse)
Chromosome: chr09 Position: 5250599 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 83.60% | 16.40% |
| All Indica | 772 | 70.98% | 29.02% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 54.75% | 45.25% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905250599 | C->A | INTERGENIC | None |