Detailed information of SNP:
|
SNP ID:
sf0905264793(Gbrowse)
Chromosome: chr09 Position: 5264793 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 52.13% | 47.87% |
| All Indica | 774 | 25.58% | 74.42% |
| All Japonica | 492 | 97.15% | 2.85% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 358 | 28.49% | 71.51% |
| Indica II | 212 | 18.40% | 81.60% |
| Indica Intermediate | 204 | 27.94% | 72.06% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905264793 | T->A | INTERGENIC | None |