Detailed information of SNP:
|
SNP ID:
sf0905279002(Gbrowse)
Chromosome: chr09 Position: 5279002 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 97.79% | 2.21% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 480 | 96.88% | 3.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905279002 | G->A | INTERGENIC | None |