Detailed information of SNP:
|
SNP ID:
sf0905281844(Gbrowse)
Chromosome: chr09 Position: 5281844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 94.90% | 5.10% |
| All Indica | 757 | 91.68% | 8.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 361 | 90.86% | 9.14% |
| Indica II | 200 | 94.00% | 6.00% |
| Indica Intermediate | 196 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905281844 | G->A | LOC_Os09g09760(LOC_Os09g09760.1) | Synonymous |