Detailed information of SNP:
|
SNP ID:
sf0905282103(Gbrowse)
Chromosome: chr09 Position: 5282103 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 67.42% | 32.58% |
| All Indica | 753 | 50.33% | 49.67% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 350 | 54.00% | 46.00% |
| Indica II | 204 | 41.18% | 58.82% |
| Indica Intermediate | 199 | 53.27% | 46.73% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905282103 | T->C | LOC_Os09g09760(LOC_Os09g09760.1) | Non-Synonymous SNP |