Detailed information of SNP:
|
SNP ID:
sf0905313628(Gbrowse)
Chromosome: chr09 Position: 5313628 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 88.18% | 11.82% |
| All Indica | 771 | 79.64% | 20.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 359 | 91.36% | 8.64% |
| Indica II | 208 | 70.67% | 29.33% |
| Indica Intermediate | 204 | 68.14% | 31.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905313628 | C->T | LOC_Os09g09800(LOC_Os09g09800.1) | Non-Synonymous SNP |