Detailed information of SNP:
|
SNP ID:
sf0905314058(Gbrowse)
Chromosome: chr09 Position: 5314058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 85.69% | 14.31% |
| All Indica | 704 | 73.44% | 26.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 333 | 67.27% | 32.73% |
| Indica II | 184 | 79.89% | 20.11% |
| Indica Intermediate | 187 | 78.07% | 21.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905314058 | G->A | LOC_Os09g09800(LOC_Os09g09800.1) | INTRON |
| sf0905314058 | G->A | LOC_Os09g09800(LOC_Os09g09800.1) | SNPs that disrupt splice sites |