Detailed information of SNP:
|
SNP ID:
sf0905339944(Gbrowse)
Chromosome: chr09 Position: 5339944 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 67.50% | 32.50% |
| All Indica | 784 | 98.60% | 1.40% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905339944 | A->G | INTERGENIC | None |