Detailed information of SNP:
|
SNP ID:
sf0905353568(Gbrowse)
Chromosome: chr09 Position: 5353568 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1314 | 90.18% | 9.82% |
| All Indica | 705 | 85.53% | 14.47% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 56 | 73.21% | 26.79% |
| Indica I | 321 | 81.62% | 18.38% |
| Indica II | 195 | 90.26% | 9.74% |
| Indica Intermediate | 189 | 87.30% | 12.70% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905353568 | T->C | INTERGENIC | None |