Detailed information of SNP:



SNP ID: sf0905399732(Gbrowse)

Chromosome: chr09

Position: 5399732
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1208 93.54% 6.46%
All Indica592 86.99% 13.01%
All Japonica497 100.00% 0.00%
Aus65 100.00% 0.00%
Indica I258 78.68% 21.32%
Indica II174 96.55% 3.45%
Indica Intermediate160 90.00% 10.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0905399732 C->T INTERGENIC None