Detailed information of SNP:
|
SNP ID:
sf0905399732(Gbrowse)
Chromosome: chr09 Position: 5399732 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1208 | 93.54% | 6.46% |
| All Indica | 592 | 86.99% | 13.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 258 | 78.68% | 21.32% |
| Indica II | 174 | 96.55% | 3.45% |
| Indica Intermediate | 160 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905399732 | C->T | INTERGENIC | None |