Detailed information of SNP:
|
SNP ID:
sf0905421573(Gbrowse)
Chromosome: chr09 Position: 5421573 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1288 | 64.13% | 35.87% |
| All Indica | 674 | 35.61% | 64.39% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 317 | 37.22% | 62.78% |
| Indica II | 183 | 36.61% | 63.39% |
| Indica Intermediate | 174 | 31.61% | 68.39% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905421573 | C->G | LOC_Os09g09960(LOC_Os09g09960.1) | Non-Synonymous SNP |