Detailed information of SNP:
|
SNP ID:
sf0905436655(Gbrowse)
Chromosome: chr09 Position: 5436655 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 96.49% | 3.51% |
| All Indica | 778 | 93.83% | 6.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 93.42% | 6.58% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905436655 | G->T | LOC_Os09g09990(LOC_Os09g09990.1) | SNPs that introduce stop codons |