Detailed information of SNP:
|
SNP ID:
sf0905436685(Gbrowse)
Chromosome: chr09 Position: 5436685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 95.04% | 4.96% |
| All Indica | 735 | 91.16% | 8.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 352 | 91.19% | 8.81% |
| Indica II | 182 | 94.51% | 5.49% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905436685 | C->T | LOC_Os09g09990(LOC_Os09g09990.1) | Non-Synonymous SNP |