Detailed information of SNP:
|
SNP ID:
sf0905463468(Gbrowse)
Chromosome: chr09 Position: 5463468 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 62.25% | 37.75% |
| All Indica | 792 | 97.35% | 2.65% |
| All Japonica | 477 | 4.40% | 95.60% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 329 | 2.13% | 97.87% |
| Tropical Japonica | 90 | 4.44% | 95.56% |
| Japonica Intermediate | 58 | 17.24% | 82.76% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905463468 | T->C | LOC_Os09g10030(LOC_Os09g10030.1) | Non-Synonymous SNP |