Detailed information of SNP:
|
SNP ID:
sf0905472217(Gbrowse)
Chromosome: chr09 Position: 5472217 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.13% | 30.87% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905472217 | A->G | LOC_Os09g10054(LOC_Os09g10054.1) | INTRON |