Detailed information of SNP:
|
SNP ID:
sf0905538417(Gbrowse)
Chromosome: chr09 Position: 5538417 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 57.21% | 42.79% |
| All Indica | 793 | 92.43% | 7.57% |
| All Japonica | 486 | 3.50% | 96.50% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 61 | 8.20% | 91.80% |
| Group VI/Aromatic | 10 | 10.00% | 90.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905538417 | A->C | INTERGENIC | None |