Detailed information of SNP:
|
SNP ID:
sf0905539776(Gbrowse)
Chromosome: chr09 Position: 5539776 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 97.13% | 2.87% |
| All Indica | 777 | 96.53% | 3.47% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 95.64% | 4.36% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905539776 | G->A | INTERGENIC | None |