Detailed information of SNP:
|
SNP ID:
sf0905564379(Gbrowse)
Chromosome: chr09 Position: 5564379 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 98.43% | 1.57% |
| All Indica | 784 | 97.19% | 2.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905564379 | G->A | LOC_Os09g10220(LOC_Os09g10220.1) | SNPs that introduce stop codons |