Detailed information of SNP:
|
SNP ID:
sf0905576010(Gbrowse)
Chromosome: chr09 Position: 5576010 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 97.76% | 2.24% |
| All Indica | 769 | 96.88% | 3.12% |
| All Japonica | 490 | 98.78% | 1.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 99.72% | 0.28% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905576010 | G->A | LOC_Os09g10240(LOC_Os09g10240.1) | Non-Synonymous SNP |