Detailed information of SNP:
|
SNP ID:
sf0905592689(Gbrowse)
Chromosome: chr09 Position: 5592689 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.42% | 3.58% |
| All Indica | 792 | 96.09% | 3.91% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 54 | 79.63% | 20.37% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905592689 | A->T | INTERGENIC | None |