Detailed information of SNP:
|
SNP ID:
sf0905607023(Gbrowse)
Chromosome: chr09 Position: 5607023 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 89.17% | 10.83% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 454 | 68.50% | 31.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 55.78% | 44.22% |
| Tropical Japonica | 87 | 97.70% | 2.30% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905607023 | T->C | INTERGENIC | None |