Detailed information of SNP:
SNP ID:
sf0905607725(Gbrowse)
Chromosome: chr09 Position: 5607725 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1303 | 89.95% | 10.05% |
All Indica | 705 | 95.18% | 4.82% |
All Japonica | 478 | 82.85% | 17.15% |
Aus | 65 | 98.46% | 1.54% |
Indica I | 330 | 99.09% | 0.91% |
Indica II | 183 | 84.15% | 15.85% |
Indica Intermediate | 192 | 98.96% | 1.04% |
Temperate Japonica | 325 | 91.38% | 8.62% |
Tropical Japonica | 86 | 82.56% | 17.44% |
Japonica Intermediate | 67 | 41.79% | 58.21% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0905607725 | A->C | INTERGENIC | None |