Detailed information of SNP:
|
SNP ID:
sf0905607725(Gbrowse)
Chromosome: chr09 Position: 5607725 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1303 | 89.95% | 10.05% |
| All Indica | 705 | 95.18% | 4.82% |
| All Japonica | 478 | 82.85% | 17.15% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 330 | 99.09% | 0.91% |
| Indica II | 183 | 84.15% | 15.85% |
| Indica Intermediate | 192 | 98.96% | 1.04% |
| Temperate Japonica | 325 | 91.38% | 8.62% |
| Tropical Japonica | 86 | 82.56% | 17.44% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905607725 | A->C | INTERGENIC | None |