Detailed information of SNP:
|
SNP ID:
sf0905651760(Gbrowse)
Chromosome: chr09 Position: 5651760 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.81% | 33.19% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905651760 | A->T | INTERGENIC | None |