Detailed information of SNP:
|
SNP ID:
sf0905687587(Gbrowse)
Chromosome: chr09 Position: 5687587 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 53.80% | 46.20% |
| All Indica | 786 | 80.41% | 19.59% |
| All Japonica | 487 | 4.52% | 95.48% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 76.23% | 23.77% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 61 | 19.67% | 80.33% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905687587 | T->A | INTERGENIC | None |