Detailed information of SNP:
|
SNP ID:
sf0905692969(Gbrowse)
Chromosome: chr09 Position: 5692969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 53.44% | 46.56% |
| All Indica | 774 | 23.90% | 76.10% |
| All Japonica | 490 | 95.31% | 4.69% |
| Aus | 60 | 95.00% | 5.00% |
| Indica I | 364 | 15.11% | 84.89% |
| Indica II | 205 | 36.59% | 63.41% |
| Indica Intermediate | 205 | 26.83% | 73.17% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905692969 | G->A | INTERGENIC | None |