Detailed information of SNP:



SNP ID: sf0905692969(Gbrowse)

Chromosome: chr09

Position: 5692969
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1379 53.44% 46.56%
All Indica774 23.90% 76.10%
All Japonica490 95.31% 4.69%
Aus60 95.00% 5.00%
Indica I364 15.11% 84.89%
Indica II205 36.59% 63.41%
Indica Intermediate205 26.83% 73.17%
Temperate Japonica332 97.89% 2.11%
Tropical Japonica92 93.48% 6.52%
Japonica Intermediate66 84.85% 15.15%
Group VI/Aromatic14 42.86% 57.14%
Intermediate41 53.66% 46.34%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0905692969 G->A INTERGENIC None