Detailed information of SNP:
|
SNP ID:
sf0905694815(Gbrowse)
Chromosome: chr09 Position: 5694815 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 57.09% | 42.91% |
| All Indica | 774 | 93.28% | 6.72% |
| All Japonica | 491 | 6.92% | 93.08% |
| Aus | 62 | 19.35% | 80.65% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 189 | 80.42% | 19.58% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 64 | 21.88% | 78.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905694815 | A->G | INTERGENIC | None |