Detailed information of SNP:
|
SNP ID:
sf0905695336(Gbrowse)
Chromosome: chr09 Position: 5695336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 94.62% | 5.38% |
| All Indica | 788 | 94.29% | 5.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 56.14% | 43.86% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 202 | 79.21% | 20.79% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905695336 | C->T | LOC_Os09g10420(LOC_Os09g10420.1) | Synonymous |