Detailed information of SNP:
|
SNP ID:
sf0905696823(Gbrowse)
Chromosome: chr09 Position: 5696823 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.17% | 7.83% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905696823 | G->A | LOC_Os09g10430(LOC_Os09g10430.1) | Synonymous |