Detailed information of SNP:
|
SNP ID:
sf0905710051(Gbrowse)
Chromosome: chr09 Position: 5710051 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 59.46% | 40.54% |
| All Indica | 794 | 91.44% | 8.56% |
| All Japonica | 492 | 4.47% | 95.53% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 64 | 14.06% | 85.94% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905710051 | G->T | LOC_Os09g10450(LOC_Os09g10450.1) | Synonymous |