Detailed information of SNP:
|
SNP ID:
sf0905710629(Gbrowse)
Chromosome: chr09 Position: 5710629 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.53% | 38.47% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 495 | 5.25% | 94.75% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905710629 | T->C | LOC_Os09g10450(LOC_Os09g10450.1) | Non-Synonymous SNP |