Detailed information of SNP:
|
SNP ID:
sf0905793041(Gbrowse)
Chromosome: chr09 Position: 5793041 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 51.74% | 48.26% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 490 | 2.45% | 97.55% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905793041 | T->A | INTERGENIC | None |