Detailed information of SNP:



SNP ID: sf0905793041(Gbrowse)

Chromosome: chr09

Position: 5793041
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1411 51.74% 48.26%
All Indica799 86.11% 13.89%
All Japonica490 2.45% 97.55%
Aus67 19.40% 80.60%
Indica I375 85.33% 14.67%
Indica II213 82.63% 17.37%
Indica Intermediate211 91.00% 9.00%
Temperate Japonica334 0.30% 99.70%
Tropical Japonica94 6.38% 93.62%
Japonica Intermediate62 8.06% 91.94%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 41.46% 58.54%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0905793041 T->A INTERGENIC None