Detailed information of SNP:
|
SNP ID:
sf0905858096(Gbrowse)
Chromosome: chr09 Position: 5858096 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.50% | 5.50% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905858096 | G->A | INTERGENIC | None |