Detailed information of SNP:
|
SNP ID:
sf0905897979(Gbrowse)
Chromosome: chr09 Position: 5897979 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.22% | 33.78% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 493 | 9.94% | 90.06% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 65 | 29.23% | 70.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905897979 | A->G | INTERGENIC | None |