Detailed information of SNP:
|
SNP ID:
sf0905968651(Gbrowse)
Chromosome: chr09 Position: 5968651 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.51% | 26.49% |
| All Indica | 792 | 57.32% | 42.68% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 39.08% | 60.92% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905968651 | C->T | INTERGENIC | None |