Detailed information of SNP:
|
SNP ID:
sf0905969596(Gbrowse)
Chromosome: chr09 Position: 5969596 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 95.62% | 4.38% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 403 | 86.35% | 13.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 80.54% | 19.46% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 91.94% | 8.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905969596 | A->G | INTERGENIC | None |