Detailed information of SNP:
|
SNP ID:
sf0905972876(Gbrowse)
Chromosome: chr09 Position: 5972876 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.96% | 41.04% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905972876 | G->A | LOC_Os09g10890(LOC_Os09g10890.1) | INTRON |