Detailed information of SNP:
|
SNP ID:
sf0906050911(Gbrowse)
Chromosome: chr09 Position: 6050911 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 76.54% | 23.46% |
| All Indica | 715 | 65.59% | 34.41% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 327 | 73.09% | 26.91% |
| Indica II | 202 | 45.05% | 54.95% |
| Indica Intermediate | 186 | 74.73% | 25.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906050911 | T->C | INTERGENIC | None |