Detailed information of SNP:
|
SNP ID:
sf0906085651(Gbrowse)
Chromosome: chr09 Position: 6085651 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.00% | 6.00% |
| All Indica | 797 | 91.72% | 8.28% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906085651 | C->A | INTERGENIC | None |