Detailed information of SNP:
|
SNP ID:
sf0906089072(Gbrowse)
Chromosome: chr09 Position: 6089072 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 70.06% | 29.94% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 497 | 19.72% | 80.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906089072 | G->A | INTERGENIC | None |