Detailed information of SNP:
|
SNP ID:
sf0906111223(Gbrowse)
Chromosome: chr09 Position: 6111223 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 80.47% | 19.53% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906111223 | T->C | INTERGENIC | None |