Detailed information of SNP:
|
SNP ID:
sf0906111264(Gbrowse)
Chromosome: chr09 Position: 6111264 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 89.96% | 10.04% |
| All Indica | 794 | 92.57% | 7.43% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906111264 | C->G | INTERGENIC | None |