Detailed information of SNP:
|
SNP ID:
sf0906114244(Gbrowse)
Chromosome: chr09 Position: 6114244 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 71.76% | 28.24% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 475 | 21.47% | 78.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 315 | 11.11% | 88.89% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906114244 | A->C | INTERGENIC | None |